SARS-CoV-2 B.1.617 Indian variants: Are electrostatic potential changes responsible for a higher transmission rate?

Roberto Cauda, Stefano Pascarella, Massimo Ciccozzi, Davide Zella, Martina Bianchi, Francesca Benedetti, Domenico Benvenuto, Francesco Broccolo, Arnaldo Caruso, Silvia Angeletti, Marta Giovanetti, Antonio Cassone

Risultato della ricerca: Contributo in rivistaArticolo in rivista

Abstract

Lineage B.1.617+, also known as G/452R.V3 and now denoted by WHO with the Greek letters δ and κ, is a recently described SARS-CoV-2 variant under investigation first identified in October 2020 in India. As of May 2021, three sublineages labeled as B.1.617.1 (κ), B.1.617.2 (δ), and B.1.617.3 have been already identified, and their potential impact on the current pandemic is being studied. This variant has 13 amino acid changes, three in its spike protein, which are currently of particular concern: E484Q, L452R, and P681R. Here, we report a major effect of the mutations characterizing this lineage, represented by a marked alteration of the surface electrostatic potential (EP) of the receptor-binding domain (RBD) of the spike protein. Enhanced RBD-EP is particularly noticeable in the B.1.617.2 (δ) sublineage, which shows multiple replacements of neutral or negatively charged amino acids with positively charged amino acids. We here hypothesize that this EP change can favor the interaction between the B.1.617+ RBD and the negatively charged ACE2, thus conferring a potential increase in the virus transmission.
Lingua originaleEnglish
pagine (da-a)6551-6556
Numero di pagine6
RivistaJournal of Medical Virology
Volume93
DOI
Stato di pubblicazionePubblicato - 2021

Keywords

  • B.1.617 δ and κ variants
  • COVID-19
  • Humans
  • Mutation
  • Protein Structure, Tertiary
  • SARS-CoV-2
  • Spike Glycoprotein, Coronavirus
  • Static Electricity
  • electrostatics potential changes

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