GHap: an R package for genome-wide haplotyping

Paolo Ajmone Marsan, Marco Milanesi, Yuri T. Utsunomiya, Adam T. H. Utsunomiya, José F. Garcia

Risultato della ricerca: Contributo in rivistaArticolo in rivista

11 Citazioni (Scopus)

Abstract

The GHap R package was designed to call haplotypes from phased marker data. Given user-defined haplotype blocks (HapBlock), the package identifies the different haplotype alleles (HapAllele) present in the data and scores sample haplotype allele genotypes (HapGenotype) based on HapAllele dose (i.e. 0, 1 or 2 copies). The output is not only useful for analyses that can handle multi-allelic markers, but is also conveniently formatted for existing pipelines intended for bi-allelic markers.
Lingua originaleEnglish
pagine (da-a)2861-2-2862
RivistaBioinformatics
Volume32
DOI
Stato di pubblicazionePubblicato - 2016

Keywords

  • genome-wide

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