GHap: an R package for genome-wide haplotyping

Yuri T. Utsunomiya; Marco Milanesi; Adam T. H. Utsunomiya; Paolo Ajmone Marsan; José F. Garcia

doi:10.1093/bioinformatics/btw356

GHap: an R package for genome-wide haplotyping

Yuri T. Utsunomiya, Marco Milanesi, Adam T. H. Utsunomiya, Paolo Ajmone Marsan, José F. Garcia

Risultato della ricerca: Contributo in rivista › Articolo in rivista

12 Citazioni (Scopus)

Abstract

The GHap R package was designed to call haplotypes from phased marker data. Given user-defined haplotype blocks (HapBlock), the package identifies the different haplotype alleles (HapAllele) present in the data and scores sample haplotype allele genotypes (HapGenotype) based on HapAllele dose (i.e. 0, 1 or 2 copies). The output is not only useful for analyses that can handle multi-allelic markers, but is also conveniently formatted for existing pipelines intended for bi-allelic markers.

Lingua originale	English
pagine (da-a)	2861-2862
Rivista	Bioinformatics
Volume	32
DOI	https://doi.org/10.1093/bioinformatics/btw356
Stato di pubblicazione	Pubblicato - 2016

Keywords

genome-wide

Accesso al documento

10.1093/bioinformatics/btw356

Altri file e collegamenti

Link a IRIS PubliCatt

Cita questo

@article{d4b3299bbf5842e1aa716b7d74ca4d6f,

title = "GHap: an R package for genome-wide haplotyping",

abstract = "The GHap R package was designed to call haplotypes from phased marker data. Given user-defined haplotype blocks (HapBlock), the package identifies the different haplotype alleles (HapAllele) present in the data and scores sample haplotype allele genotypes (HapGenotype) based on HapAllele dose (i.e. 0, 1 or 2 copies). The output is not only useful for analyses that can handle multi-allelic markers, but is also conveniently formatted for existing pipelines intended for bi-allelic markers.",

keywords = "genome-wide, genome-wide",

author = "Utsunomiya, {Yuri T.} and Marco Milanesi and Utsunomiya, {Adam T. H.} and {Ajmone Marsan}, Paolo and Garcia, {Jos{\'e} F.}",

year = "2016",

doi = "10.1093/bioinformatics/btw356",

language = "English",

volume = "32",

pages = "2861--2862",

journal = "Bioinformatics",

issn = "1367-4803",

publisher = "Oxford University Press",

}

TY - JOUR

T1 - GHap: an R package for genome-wide haplotyping

AU - Utsunomiya, Yuri T.

AU - Milanesi, Marco

AU - Utsunomiya, Adam T. H.

AU - Ajmone Marsan, Paolo

AU - Garcia, José F.

PY - 2016

Y1 - 2016

N2 - The GHap R package was designed to call haplotypes from phased marker data. Given user-defined haplotype blocks (HapBlock), the package identifies the different haplotype alleles (HapAllele) present in the data and scores sample haplotype allele genotypes (HapGenotype) based on HapAllele dose (i.e. 0, 1 or 2 copies). The output is not only useful for analyses that can handle multi-allelic markers, but is also conveniently formatted for existing pipelines intended for bi-allelic markers.

AB - The GHap R package was designed to call haplotypes from phased marker data. Given user-defined haplotype blocks (HapBlock), the package identifies the different haplotype alleles (HapAllele) present in the data and scores sample haplotype allele genotypes (HapGenotype) based on HapAllele dose (i.e. 0, 1 or 2 copies). The output is not only useful for analyses that can handle multi-allelic markers, but is also conveniently formatted for existing pipelines intended for bi-allelic markers.

KW - genome-wide

UR - http://hdl.handle.net/10807/91442

U2 - 10.1093/bioinformatics/btw356

DO - 10.1093/bioinformatics/btw356

M3 - Article

SN - 1367-4803

VL - 32

SP - 2861

EP - 2862

JO - Bioinformatics

JF - Bioinformatics

ER -

GHap: an R package for genome-wide haplotyping

Abstract

Keywords

Accesso al documento

Altri file e collegamenti

Fingerprint

Cita questo