Additional file 10: Figure S1. of Transcriptome profiling of soybean (Glycine max) roots challenged with pathogenic and non-pathogenic isolates of Fusarium oxysporum

Comparison of RNA-Seq and real-time RT-PCR analysis of selected soybean genes in response to inoculation with F. oxysporum. Expression profiles of (A) carbohydrate kinase (Glyma.12G051800), (B) cell-wall invertase (Glyma.15G024600), (C) bidirectional sugar transporter sweet10-like (Glyma.04G198400), (D) chalcone isomerase (Glyma.20G241700), (E) chitinase (Glyma.01G160100), (F) glutathione s-transferase (Glyma.08G174900), (G) laccase-7-like (Glyma.U027300), (H) myb transcription factor myb84 (Glyma.08G042100), (I) pathogenesis-related protein class 10 (Glyma.15G145600), (J) sucrose synthase (Glyma.19G212800), (K) endoglucanase (Glyma.05G236400), (L) trans-cinnamate 4-monooxygenase (Glyma.20G114200), (M) proline-rich protein (Glyma.15G199700), (N) bidirectional sugar transporter sweet3-like (Glyma.04G238100), (O) 1-aminocyclopropane-1-carboxylate oxidase 1 (Glyma.05G222400), (P) seed linoleate 9Â s-lipoxygenase (Glyma.08G189600), (Q) peroxidase (Glyma.09G023000), (R) sulphate transporter (Glyma.15G052000). Dotted lines and histograms represent values expressed as fold change of transcript levels in the inoculated FO36 and FO40 F. oxysporum samples with respect to the transcript levels in control samples at 72 and 96 hpi assessed by RNA-Seq and real-time RT-PCR analysis, respectively. The asterisk (*) means that the FC revealed by RNA-Seq method for that gene is included among HDEGs. (PPTX 149Â kb)