Assessing The Spatial Dependence of Adaptive Loci in 43 European and Western Asian Goat Breeds Using AFLP Markers

Licia Colli, Riccardo Negrini, Paolo Ajmone Marsan, Letizia Nicoloso, Paola Crepaldi, Stéphane Joost, Mahamoud Abo-Shehada, Jamil Al Tarrayrah, Philippe Baret, Roswitha Baumung, Albano Beja-Pereira, Marco Bertaglia, Salvatore Bordonaro, Mike Bruford, Régis Caloz, Javier Canon, Irene Cappuccio, Antonello Carta, Mario Cicogna, Oscar CortesStella Dalamitra, Krugmann Daniela, Petrit Dobi, Popielarczyk Dominik, Susana Dunner, Giuseppe D'Urso, M. A.A. El-Barody, Phillip England, Georg Erhardt, Okan Ertugrul, Eva-Maria Prinzenberg, Eveline Ibeagha-Awemu, Ewa Strzelec, Aziz Fadlaoui, Francesca Fornarelli, David Garcia, Andreas Georgoudis, Gesine Lühken, Stefano Giovenzana, Katja Gutscher, Godfrey Hewitt, Anila Hoda, Horst Brandt, Anton Istvan, Gabriela Juma, Sam Jones, Katerina Karetsou, Georgios Kliambas, Evren Koban, Olga Kutita, Lazlo Fesus, A. Lenstra Johannes, Christina Ligda, Shirin Lipsky, Gordon Luikart, Glowatzki Marie-Louise, Marta Marilli, Donata Marletta, J. Nijman Isaäc, Gabriela Obexer-Ruff, Christos Papachristoforou, Lorraine Pariset, Christina Peter, Trinidad Perez, Fabio Pilla, Mariasilvia D'Andrea, Niznikowski, Roman Roosen, Jutta, Riccardo Scarpa, Tiziana Sechi, Pierre Taberlet, Martin Taylor, Inci Togan, Michel Trommetter, Alessio Valentini, M. Van Cann Lisette, Augustin Vlaic, Louise Wiskin, Stéphanie Zundel

Research output: Contribution to journalArticle

12 Citations (Scopus)

Abstract

Background: During the past decades, neutral DNA markers have been extensively employed to study demography, population genetics and structure in livestock, but less interest has been devoted to the evaluation of livestock adaptive potential through the identification of genomic regions likely to be under natural selection. Methodology/Principal findings: Landscape genomics can greatly benefit the entire livestock system through the identification of genotypes better adapted to specific or extreme environmental conditions. Therefore we analyzed 101 AFLP markers in 43 European and Western Asian goat breeds both with MATSAM software, based on a correlative approach (SAM), and with MCHEZA and BAYESCAN, two FST based software able to detect markers carrying signatures of natural selection. MATSAM identified four loci possibly under natural selection - also confirmed by FST-outlier methods - and significantly associated with environmental variables such as diurnal temperature range, frequency of precipitation, relative humidity and solar radiation. Conclusions/Significance: These results show that landscape genomics can provide useful information on the environmental factors affecting the adaptive potential of livestock living in specific climatic conditions. Besides adding conservation value to livestock genetic resources, this knowledge may lead to the development of novel molecular tools useful to preserve the adaptive potential of local breeds during genetic improvement programs, and to increase the adaptability of industrial breeds to changing environments. © 2014 Colli et al
Original languageEnglish
Pages (from-to)N/A-N/A
JournalPLoS One
Volume9
DOIs
Publication statusPublished - 2014

Keywords

  • AFLP Markers
  • Western Asian Goat Breeds

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